Try This
<asp:Repeater id="repeaterentry" runat="server">
<HeaderTemplate>
<table border="1" width="100%">
<colgroup>
<col style="width: 10px;" />
<col />
<col />
</colgroup>
<tr>
<th align="left" class="allCheckbox">
<asp:CheckBox ID="allCheckbox1" runat="server" />
</th>
<th>
<asp:LinkButton ID="lnkbtn1" runat="server" CommandName="UserName">Name</asp:LinkButton>
</th>
<th>
Password
</th>
</tr>
</HeaderTemplate>
<ItemTemplate>
<tr>
<td class="singleCheckbox">
<asp:CheckBox ID="chkContainer" runat="server" />
</td>
<td>
<%#Eval("uname") %>
</td>
<td>
<%#Eval("upass")%>
</td>
</tr>
</ItemTemplate>
<FooterTemplate>
</table>
</FooterTemplate>
</asp:Repeater
in js
<script type="text/javascript">
$(function () {
var $allCheckbox = $('.allCheckbox :checkbox');
var $checkboxes = $('.singleCheckbox :checkbox');
$allCheckbox.change(function () {
if ($allCheckbox.is(':checked')) {
$checkboxes.attr('checked', 'checked');
}
else {
$checkboxes.removeAttr('checked');
}
});
$checkboxes.change(function() {
if ($checkboxes.not(':checked').length) {
$allCheckbox.removeAttr('checked');
}
else {
$allCheckbox.attr('checked', 'checked');
}
});
});
</script>
working example available